08/17/08

A.   Journal Papers

1.       M. Zhu, S. Ding, R. R. Brooks, Q. Wu, N. S.V. Rao, and S. S. Iyengar. Fusion of Threshold Rules for Target Detection in Wireless Sensor Networks, ACM Transactions on Sensor Networks, accepted with minor revision 2008

2.       Y. Yang, M. Zhu, L. Wu, and J. Zhou, Assessment of Data Processing to Improve Reliability of Microarray Experiments Using Genomic DNA Reference, 1471-2164/9/S2/S5 BMC Genomics 2008

3.       J. Yuan, M. Zhu, D. A. Lightfoot, M. J. Iqbal, and K. Meksem , In silico Comparison of Transcript Abundances During Arabidopsis thaliana and Glycine max Resistance to Fusarium virguliforme, to appear in BMC Genomics 2008

4.       M. Xu, M. Zhu, L. Zhang, A Stable Iterative Method for Refining Discriminative Gene Clusters, 1471-2164/9/S2/S18 BMC Genomics 2008

5.       M. Zhu and Q. Wu. A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets, BMC Genomics, 9 (Suppl 1):S5 doi:10.1186/1471-2164-9-S1-S5, 2008

6.       Q. Wu, J. Gao, M. Zhu, N.S.V. Rao, J. Huang, S.S. Iyengar. Optimal Resource Utilization for Distributed Remote Visualization, IEEE Transactions on Computers, vol. 57(1), pp. 55-68. January 2008.

7.       Q. Wu, M. Zhu, N.S.V. Rao, and S. S. Iyengar. Integration of Sensing and Computing in an Intelligent Decision Support System for Homeland Security Defense Pervasive and Mobile Computing, Pervasive and Mobile Computing Elsevier, To appear in 2008

8.       M. Zhu, Q. Wu, N.S.V. Rao, and S. S. Iyengar, Optimal Pipeline Decomposition and Adaptive Network Mapping to Support Distributed Remote Visualization: Journal of Parallel and Distributed Computing, vol. 67(8), pp. 947-956. 2007

9.       R. Meyer, J. Yuan, J. Afzal, J. Iqbal, M Zhu, G. Garvey, and D. A. Lightfoot Identification of Gsr1: A locus inferred to regulate gene expression in response to exogenous glutamine, Euphytica, vol. 151, no 3, pp. 291-302 October 2006

10.    N.S.V. Rao, S. M Carter, Q. Wu, W. R Wing, and M. Zhu, A. Mezzacappa, M. Veeraraghavan and J. M Blondin, Networking for large-scale science: infrastructure, provisioning, transport and application mapping, Journal of Physics: Conference Series, vol. 16, pp. 541-545, June 2005

11.    X. Zheng, M. Veeraraghavan, N.S.V. Rao, Q. Wu, and M. Zhu, CHEETAH: Circuitswitched High-speed End-to-End Transport Architecture testbed, IEEE Communications Magazine, vol. 43, issue 8, pp. 11-17, August 2005.

12.    R.R. Brooks, M. Zhu, J. Lamb, and S.S. Iyengar Aspect-oriented design of sensor networks, Journal of Parallel and Distributed Computing, vol. 64, issue 7, pp. 853-865, July 2004.

13.    Q. Wu, S.S. Iyengar, and M. Zhu, Web image retrieval using self-organizing feature map, Journal of the American Society for Information Science and Technology, vol. 52, no. 10, pp. 868-875, August 2001.

B.   Book Chapters

14.    Q. Wu, M. Zhu, N. S.V. Rao, R. R. Brooks, S. S. Iyengar, M. Meng, “An Integrated Intelligent Decision Support System based on Sensor and Computer Networks”, Chapter 13, System of Systems - Principles and Applications, to appear in 2008

15.    R.R. Brooks, M. Zhu, M. Piretti, C. Griffin and S.S. Iyengar, Emergent routing and resource discovery, Disruptive Security Technologies with Mobile Code and Peer-to-Peer Networks, Chapter 11, pp. 283-305, R.R. Brooks(editor), CRC Press 2005

16.    Q. Wu, N.S.V. Rao, R.R. Brooks, S.S. Iyengar, and M. Zhu, On computational and networking problems in distributed sensor networks, Handbook of Sensor Networks: Compact Wireless and Wired Sensing Systems, M. Ilyas and I. Mahgoub (editors), CRC Press LLC, August 2004.

17.    M. Zhu, R.R. Brooks, M. Pirretti, and S.S. Iyengar, Physics and Chemistry, Frontiers in Distributed Sensor Networks, Chapter 7, S.S. Iyengar and Richard R. Brooks (editors), CRC Press Inc., September 2003.

18.    M. Zhu, J. Lamb, R.R. Brooks, M. Pirretti, and S.S. Iyengar, Example DSN control hierarchy, Frontiers in Distributed Sensor Networks, Chapter 8, S. S. Iyengar and R. R. Brooks (editors), CRC Press Inc., September 2003.

C.   Conference Papers

19.    M. Zhu, N. K. Yadav, A Distributed System for Parallel Simulations, to appear in proceedings of IEEE Global Communications Conference (IEEE GLOBECOM 2008).

20.    Y. Gu, Q. Wu, M. Zhu, and N.S.V. Rao. Complexity analysis of pipeline mapping in heterogeneous distributed networks. To appear in Proceedings of International Symposium on Computer and Sensor Network Systems, Zhengzhou, P.R. China, April 7-10, 2008 (ISCSNS08). Also to appear in International Journal of Distributed Sensor Networks, 2008.

21.    Y. Lin, Q. Wu, N.S.V. Rao, and M. Zhu. Advance bandwidth scheduling algorithms in dedicated networks. To appear in Proceedings of International Symposium on Computer and Sensor Network Systems, Zhengzhou, P.R. China, April 7-10, 2008 (ISCSNS08). Also to appear in International Journal of Distributed Sensor Networks, 2008.

22.    Q. Wu, Y. Gu, M. Zhu, and N.S.V. Rao. Optimizing network performance of computing pipelines in distributed environments. Accepted by the 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing, to appear in Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Miami, Florida, April 14-18, 2008 (PDSEC08 in conjunction with IPDPS08, Estimated Impact of Conference: 0.91/1.0).

23.    Q. Wu, M. Zhu, and N.S.V. Rao. Computational monitoring and steering using network-optimized visualization and Ajax web server. To appear in Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Miami, Florida, April 14-18, 2008 (IPDPS08, Estimated Impact of Conference: 0.91/1.0, acceptance rate: 25%).

24.    Y. Lin, Q. Wu, N.S.V. Rao, and M. Zhu. On design of scheduling algorithms for advance bandwidth reservation in dedicated networks. In Proceedings of INFOCOM High-Speed Networks Workshop, Phoenix, Arizona, April 13, 2008

25.    M. Zhu, Q. Wu, “A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets”, Proceedings of International Conference on Bioinformatics & Computational Biology BIOCOMP'07, vol. II, pp 700-706, Las Vegas, Nevada. June 2007( Estimated Impact factor 0.95/1.0)

26.    Y. Yang, M. Zhu, L. Wu, J. Zhou (2007). Biostatistical Considerations of the Use of Genomic DNA Reference in Microarrays, Proceedings of 7th IEEE Bioinformatics and Bioengineering (BIBE07), Boston, MA, vol. I, pp 593-600. (First Runner-up of Best Application Paper Award) October 2007

27.    J. Yuan, M. Zhu, M. Iqbal, D. A. Lightfoot (2007). A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg), Proceedings of 7th IEEE Bioinformatics and Bioengineering, Boston, MA,vol. I, pp 585-592, October 2007

28.    Q. Wu, J. Gao, and M. Zhu, A scalable framework for distributed virtual reality using heterogeneous processors. The 16th International Conference on Artificial Reality and Telexistence, Lecture Notes in Computer Science vol 1, pp. 314-323, Hangzhou, P.R. China, November 2006

29.    M. Zhu, Q. Wu, Y. Yang, and J. Zhou, A New approach to identify functional modules using random matrix theory, Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, vol. 1, pp. 117-123, Toronto, Canada, September 2006

30.    M. Zhu, S. Ding, R.R. Brooks, Q. Wu, N.S.V. Rao and S. S. Iyengar, Fusion of threshold rules for target detection in self-organizing sensor networks, 9th ONR/GTRI Workshop on Target Tracking and Sensor Fusion, Gatlinburg, TN June 2006.

31.    Q. Wu, M. Zhu, and N.S.V. Rao. System design for on-line distributed computational visualization and steering. International Conference on E-learning and Games, Lecture Notes in Computer Science, vol. 3942, pp. 1121–1130, Hangzhou, China, April 2006

32.    M. Zhu, S.S. Iyengar, Q. Wu, and N.S.V. Rao, Optimal visualization pipeline decomposition and adaptive network mapping to support remote visualization, Proceeding of the 13th Annual Mardi Gras Conference: Frontiers of Grid Applications and Technologies, Baton Rouge, LA, February 2005.

33.    M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar, On optimal mapping of visualization pipeline onto linear arrangement of network nodes, Proceedings of SPIE 2004 (International Society for Optical Engineering), Conference on Visualization and Data Analysis, vol. 5669, pp. 1-11, San Jose, CA January 2005.

34.    M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar, Adaptive Visualization Pipeline Decomposition and Mapping onto Computer Networks, Proceedings of the 3rd International Conference on Image and Graphics, vol 1, pp. 402-405, Hong Kong, China, December 2004.

35.    R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar, Distributed Adaptation Methods for Wireless Sensor Networks,  Proceedings of Globecom 2003, vol. 5, pp. 2967-2971, December 2003 

36.    R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar, Adaptive routing using emergent protocols in wireless Ad Hoc Sensor Networks, Proceedings of SPIE 48th annual meeting symposium, Advanced Signal Processing Algorithms, Architecture, and Implementation, pp.155-163, San Diego, CA, August 2003