A.   Journal Papers

1. M. Zhu and Q. Wu, A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets, BMC Genomics, to appear in March 2008

2. Q. Wu, J. Gao, M. Zhu, N.S.V. Rao, J. Huang, S.S. Iyengar, Optimal resource utilization for distributed remote visualization: IEEE transactions on Computers, Volume 57, Issue 1, 55-68, Jan 2008

3.  M. Zhu, Q. Wu, N.S.V. Rao, and S. S. Iyengar, Optimal pipeline decomposition and adaptive network mapping to support distributed remote visualization: Volume 67 , Issue 8, pp. 947-956, Journal of Parallel and Distributed Computing, 2007

4.      R. Meyer, J. Yuan,  J. Afzal, J. Iqbal, M. Zhu, G. Garvey, D.A. Lightfoot, Identification of Gsr1: A locus inferred to regulate gene expression in response to exogenous glutamine: Euphytica, 151(3), pp. 291-302, 2006

5. Q. Wu, J. Gao, M. Zhu, A Scalable Framework for Distributed Virtual Reality Using Heterogeneous Processors, Lecture Notes in Computer Science, Springer Berlin / Heidelberg, Volume 4282, pp. 314-323, Nov 2006

6.       N.S.V. Rao, S. M Carter, Q. Wu, W. R Wing, and M. Zhu, A. Mezzacappa, M. Veeraraghavan and J. M Blondin, Networking for large-scale science: infrastructure, provisioning, transport and application mapping, Journal of Physics: Conference Series Vol. 16, pp. 541-545, June 2005

7.      X. Zheng, M. Veeraraghavan, N.S.V. Rao, Q. Wu, and M. Zhu, CHEETAH: Circuitswitched High-speed End-to-End Transport Architecture testbed, IEEE Communications Magazine, Vol. 43,  Issue 8, pp. 11-17, August 2005.

8.      R.R. Brooks, M. Zhu, J. Lamb, and S.S. Iyengar Aspect-oriented design of sensor networks Journal of Parallel and Distributed Computing, Vol. 64, Issue 7, pp. 853-865, July 2004.

9.      Q. Wu, S.S. Iyengar, and M. Zhu, Web image retrieval using self-organizing feature map, Journal of the American Society for Information Science and Technology, Vol. 52, no. 10, pp. 868-875, August 2001.

B.   Book Chapters

1. Q. Wu, M. Zhu, N. S.V. Rao, R. R. Brooks, S. S. Iyengar, M. Meng, “An Integrated Intelligent Decision Support System based on Sensor and Computer Networks”, Chapter 13, System of Systems - Principles and Applications, to appear in 2008     

2. R.R. Brooks, M. Zhu, M. Piretti, C. Griffin and S.S. Iyengar, Emergent routing and resource discovery, Disruptive Security Technologies with Mobile Code and Peer-to-Peer Networks, Chapter 11, pp. 283-305, R.R. Brooks(editor), CRC Press 2005.

3.      Q. Wu, N.S.V. Rao, R.R. Brooks, S.S. Iyengar, and M. Zhu, On computational and networking problems in distributed sensor networks, Handbook of Sensor Networks: Compact Wireless and Wired Sensing Systems, M. Ilyas and I. Mahgoub (editors), CRC Press LLC, August 2004.

4.      M. Zhu, R.R. Brooks, M. Pirretti, and S.S. Iyengar, Physics and Chemistry, Frontiers in Distributed Sensor Networks, Chapter 7, S.S. Iyengar and Richard R. Brooks (editors), CRC Press Inc., September 2003.

5.      M. Zhu, J. Lamb, R.R. Brooks, M. Pirretti, and S.S. Iyengar, Example DSN control hierarchy, Frontiers in Distributed Sensor Networks, Chapter 8, S. S. Iyengar and R. R. Brooks (editors), CRC Press Inc., September 2003. 

C.   Conference Papers

1. M. Zhu, Q. Wu, and N. S. V. Rao, Computational Monitoring and Steering Using Network-Optimized Visualization and Ajax Web Server, To appear in Proceedings of 22nd IEEE International Parallel and Distributed Processing Symposium, Miami, Florida, April 2008.

2. Q. Wu, Y. Gu, M. Zhu, Nageswara Rao, Optimizing Network Performance of Computing Pipelines in Distributed Environments, To appear in Proceedings of 22nd IEEE International Parallel and Distributed Processing Symposium, Miami, Florida, April 2008.

3. Y. Yang, M. Zhu, L. Wu, J. Zhou (2007). Biostatistical Considerations of the Use of Genomic DNA Reference in Microarrays, Proceedings of 7^th IEEE Bioinformatics and Bioengineering (BIBE07), Boston, MA, Vol. I, pp 593-600.  (First Runner-up of Best Application Paper Award) October 2007.

4. J. Yuan, M. Zhu, M. Iqbal, D. A. Lightfoot (2007). A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg), Proceedings of 7^th IEEE Bioinformatics and Bioengineering (BIBE07), Boston, MA, Vol. I, pp 585-592, October 2007.

5. M. Zhu, Q. Wu, “A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets”, Proceedings of International Conference on Bioinformatics & Computational Biology BIOCOMP'07, Las Vegas, Nevada. Vol. II, pp 700-706, June 2007

6. M. Zhu, Q. Wu, Y. Yang, and J. Zhou, A New Approach to Identify Functional Modules Using Random Matrix Theory,  2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Vol. 1, pp. 117-123, Toronto, Canada, September 2006.

7.   M. Zhu, S. Ding, R.R. Brooks, Q. Wu, N.S.V. Rao and S. S. Iyengar, Fusion of threshold rules for target detection in self-organizing sensor networks, 9th ONR/GTRI Workshop on Target Tracking and Sensor Fusion, Gatlinburg, TN June  2006.

8.   Q. Wu, M. Zhu, and N.S.V. Rao, System Design on On-line Computational Visualization and Steering, International Conference on E-learning and Games, (Edutainment06). Published in Lecture Notes in Computer Science 3942, pp. 1121–1130, Hangzhou, China, China, April 2006.

9.   M. Zhu, S.S. Iyengar, Q. Wu, and N.S.V. Rao, Optimal visualization pipeline decomposition and adaptive network mapping to support remote visualization, the 13th Annual Mardi Gras Conference: Frontiers of Grid Applications and Technologies, Baton Rouge, LA, February 2005.

10.   M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar, On optimal mapping of visualization pipeline onto linear arrangement of network nodes, Proceedings of SPIE 2004 (International Society for Optical Engineering), Conference on Visualization and Data Analysis 2005, Vol. 5669, pp. 1-11, San Jose, CA, January 2005.

11. M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar, Adaptive Visualization Pipeline Decomposition and Mapping onto Computer Networks, Proceedings of the 3rd International Conference on Image and Graphics, pp. 402-405, Hong Kong, China, December 2004.

12. R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar, Distributed Adaptation Methods for Wireless Sensor Networks, Globecom 2003, vol. 5, pp. 2967-2971, December 2003

13. R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar, Adaptive routing using emergent protocols in wireless Ad Hoc Sensor Networks, SPIE 48th annual meeting symposium, Advanced Signal Processing Algorithms, Architecture, and Implementation, pp.155-163,  San Diego, CA, August 2003

D.   Submissions